CHANGES IN VERSION 0.99.6 ------------------------- FEATURES o summary() for NormRFit instances shows now percentage of bins at each significance level o getEnrichment() takes argument for computing a non-standardized enrichment PERFORMANCE o SIMD optimization for OpenMP >= ver4 CHANGES IN VERSION 0.99.5 ------------------------- FEATURES o summary() for NormRFit instances of types "diffR" and "regimeR" now shows componentwise test results BUGFIXES o Removing MAKEFLAG "-D_GLIBCXX_PARALLEL" because it is experimental CHANGES IN VERSION 0.99.4 ------------------------- BUGFIXES o Removing PKG_CPPFLAGS and PKG_LIBS variables from src/Makevars CHANGES IN VERSION 0.99.3 ------------------------- BUGFIXES o Fixing imports in roxygen2 CHANGES IN VERSION 0.99.2 ------------------------- FEATURES o Vignette finished o Documentation for NormRFit-class & NormRCountConfig-class updated BUGFIXES o deploy.log removed CHANGES IN VERSION 0.99.1 ------------------------- FEATURES o Added examples for normr-methods, BamCountConfig-class & NormRFit-class o Moved all documentation to one manpage (normr.Rd) o Vignette: knitr-based vignette for normr finished o exportR(): Export NormRFit objects to bed, bedGraph and bigWig o plot(): Produce a small diagnostic plot for NormRFit objects o diffR(): Intersection of results for switched labels increases specificity BUGFIXES o Removed deploy.log o Fixed build errors and warnings o Fixed failing test CHANGES IN VERSION 0.99.0 ------------------------- FEATURES o huge performance speedup by data compression to unique tupels only o Kahan summation for log posterior summation to reduce numerical error o Standardized enrichment computation in C++. This enrichment can be well compared between various ChIP-seq experiments o exportR() function provides methods to export results of fits as a region bed file or bigWig track of standardized enrichment