23/11/2016 Version 1.3.7: * RSelenium functionality is removed due to no further support * All results (clustering and biology) are now written to phenoData and featureData slots of the input 'SCESet' object * 'Labels' and 'Cell Outliers' tabs in the interactive shiny session are removed, because these data can now be visualized on the other heatmaps 14/09/2016 Version 1.1.7: * Added integration with scater package * Added full non-interactive support 04/08/2016 Version 1.1.6: * Optimised distance and consensus calculations using Rccp * Optimised some other bits and pieces * SC3 is now up to 2 times faster for 1000 cells datasets 28/06/2016 Version 1.1.5: * Added svm.train.inds parameter - it allows a user to train SVM on a selected subset of cells 15/04/2016 The latest version 0.99.37 contains the following updates * tSNE panel is added to the interactive session * additional table has been added to the output - it contains original and new cell labels in the order corresponding to the order of cells in the input expression matrix * three functions corresponding to biological interpretation are now exported and can be used manually: get_de_genes, get_marker_genes, get_outl_cells. See their documentation for more details * several bugs have been fixed 01/03/2016 The latest version 0.99.23 contains the following major updates * Major redesign * Added description panels * Fixed a bug with RSelenium * Added a proper Excel export using WriteXLS library 10/12/2015 The first version 0.99.0 is submitted to Bioconductor