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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("flowPloidy")
In most cases, you don't need to download the package archive at all.
flowPloidy
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Analyze flow cytometer data to determine sample ploidy
Bioconductor version: Release (3.5)
Determine sample ploidy via flow cytometry histogram analysis. Reads Flow Cytometry Standard (FCS) files via the flowCore bioconductor package, and provides functions for determining the DNA ploidy of samples based on internal standards.
Author: Tyler Smith <tyler at plantarum.ca>
Maintainer: Tyler Smith <tyler at plantarum.ca>
Citation (from within R,
enter citation("flowPloidy")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("flowPloidy")
Documentation
| HTML | R Script | flowPloidy: FCM Histograms |
| HTML | R Script | flowPloidy: Getting Started |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | FlowCytometry, GUI, Regression, Software, Visualization |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (1 year) |
| License | GPL-3 |
| Depends | R (>= 3.4) |
| Imports | flowCore, car, caTools, knitr, rmarkdown, minpack.lm, shiny, methods, graphics, stats, utils |
| LinkingTo | |
| Suggests | flowPloidyData, testthat |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/plantarum/flowPloidy |
| BugReports | https://github.com/plantarum/flowPloidy/issues |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | flowPloidy_1.2.0.tar.gz |
| Windows Binary | flowPloidy_1.2.0.zip |
| Mac OS X 10.11 (El Capitan) | flowPloidy_1.2.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/flowPloidy |
| Package Short Url | http://bioconductor.org/packages/flowPloidy/ |
| Package Downloads Report | Download Stats |
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