NEW RELEASE VERSION 0.99.0 ------------------------- PERSISTING ISSUES o direct functions are currently overwritten by rule-based functions. Once CyREST updates, this issue will be fixed. NEW FEATURES o added setDefaultEdgeSourceArrowColor to set the default arrow color o added setDefaultEdgeTargetArrowColor to set the default target arrow color o added two modes (interpolate and lookup) to setEdgeSourceArrowColorRule o added two modes (interpolate and lookup) to setEdgeTargetArrowColorRule o redraw is no longer required as the Cytoscape interface updates automatically. o lockNodeDimensions is no longer required. Functions that required locked node dimensions do this automatically. SIGNIFICANT USER-VISIBLE CHANGES o removed new.CystoscapeWindow. CytoscapeWindow does the same job now. o removed setEdgeLabelWidthDirect o removed setEdgeLabelPositionDirect o removed setEdgeSourceArrowOpacityDirect o removed setEdgeTargetArrowOpacityDirect o removed set.node.or.edge.properties o removed getViewCoordinates o removed setWindowSize o removed fitSelectedContent o removed raiseWindow o removed setTooltipDismissDelay o removed setTooltipInitialDelay o removed clearMsg o removed msg o removed createWindowFromSelection o removed setNodeImageDirect o new names for features: > getNodeShapes(cw) [1] "DIAMOND" "HEXAGON" "OCTAGON" "VEE" [5] "TRIANGLE" "PARALLELOGRAM" "ELLIPSE" "RECTANGLE" [9] "ROUND_RECTANGLE" > getLayoutNames(cw) [1] "attribute-circle" "stacked-node-layout" "degree-circle" [4] "circular" "attributes-layout" "kamada-kawai" [7] "force-directed" "grid" "hierarchical" [10] "fruchterman-rheingold" "isom" > getLineStyles(cw) [1] "LONG_DASH" "PARALLEL_LINES" "FORWARD_SLASH" "DASH_DOT" [5] "BACKWARD_SLASH" "VERTICAL_SLASH" "CONTIGUOUS_ARROW" "SEPARATE_ARROW" [9] "SOLID" "EQUAL_DASH" "ZIGZAG" "DOT" [13] "SINEWAVE" > getArrowShapes(cw) [1] "DIAMOND" "NONE" "T" "DELTA" "CIRCLE" [6] "ARROW" "HALF_TOP" "HALF_BOTTOM"