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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MBttest")
In most cases, you don't need to download the package archive at all.
MBttest
|
This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see MBttest.
Multiple Beta t-Tests
Bioconductor version: 3.4
MBttest method was developed from beta t-test method of Baggerly et al(2003). Compared to baySeq (Hard castle and Kelly 2010), DESeq (Anders and Huber 2010) and exact test (Robinson and Smyth 2007, 2008) and the GLM of McCarthy et al(2012), MBttest is of high work efficiency,that is, it has high power, high conservativeness of FDR estimation and high stability. MBttest is suit- able to transcriptomic data, tag data, SAGE data (count data) from small samples or a few replicate libraries. It can be used to identify genes, mRNA isoforms or tags differentially expressed between two conditions.
Author: Yuan-De Tan
Maintainer: Yuan-De Tan <tanyuande at gmail.com>
Citation (from within R,
enter citation("MBttest")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MBttest")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MBttest")
| R Script | Analysing RNA-Seq count data with the "MBttest" package | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | AlternativeSplicing, Coverage, DifferentialExpression, DifferentialSplicing, GeneExpression, MultipleComparison, SAGE, Sequencing, Software, Transcription |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.3 (R-3.3) (1 year) |
| License | GPL-3 |
| Depends | R (>= 3.3.0), stats, gplots, gtools, graphics, base, utils, grDevices |
| Imports | |
| LinkingTo | |
| Suggests | BiocStyle, BiocGenerics |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | MBttest_1.2.0.tar.gz |
| Windows Binary | MBttest_1.2.0.zip |
| Mac OS X 10.9 (Mavericks) | MBttest_1.2.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/MBttest/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/MBttest/ |
| Package Downloads Report | Download Stats |
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