Changes in version 1.6.0: o Bug fixes. Changes in version 1.4.1: o Many improvements and bug fixes. Changes in version 1.1.5: o A feature was introduced to handle an issue with gene symbols in Cufflinks (in prepareCuff()). o A bug relating to strand-issues with annotatePTC was fixed. o Filtering was removed from non-relevant functions. Changes in version 1.0.0: o Initial release.