Changes in version 1.5.2 (2016-03-31): o update vignette Changes in version 1.5.1 (2015-10-30): o add gmtlist2file function Changes in version 1.5.0 (2015-10-14): o Bioconductor 3.2 Dev Changes in version 1.4.0 (2015-10-14): o Bioconductor 3.2 Changes in version 1.2.0 (2015-09-01): o update exmaple dataset. o add drug repositioning gene sets and anlaysis. Changes in version 1.1.6 (2015-07-14): o debug cutree. o values are -log2(FDR) in heatmapPEI instead of -log(FDR). Changes in version 1.1.5 (2015-07-14): o redesign cogena. o add coExp and clEnrich as a substitute for the original cogena function. o update vignette o add tests o add PPIinfo and hubGene funtions, delete PPIenrichment, netInCluster and plotPPI Changes in version 1.1.4 (2015-07-09): o add PPIenrichment function. o debug pCluster function. Changes in version 1.1.3 (2015-06-25): o add heatmapEnrich, plotPPI and netInCluster functions. o sampleColor randomly in heatmapCluster. Changes in version 1.1.1 (2015-04-27): o add Molecular Signatures Database v5.0. o import mclust instead of suggesting it. Changes in version 1.0.0 (2015-04-16): o cogena is released with Bioconductor 3.1. Changes in version 0.99.3 (2015-04-02): o use makeCluster to creat cluster to avoid checking error from Windows. Changes in version 0.99.2 (2015-04-01): o Update indent based on the coding style of Bioconductor. o Trim long line. Changes in version 0.99.1 (2015-03-31): o Add runnable examples for functions. o Update R version dependency from 2.10 to 3.2. o Add non-empty value sections for some functions. Changes in version 0.99.0 (2015-03-27): o Submit cogena to Bioconductor.