To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("NOISeq")
In most cases, you don't need to download the package archive at all.
NOISeq
|
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see NOISeq.
Exploratory analysis and differential expression for RNA-seq data
Bioconductor version: 3.3
Analysis of RNA-seq expression data or other similar kind of data. Exploratory plots to evualuate saturation, count distribution, expression per chromosome, type of detected features, features length, etc. Differential expression between two experimental conditions with no parametric assumptions.
Author: Sonia Tarazona, Pedro Furio-Tari, Maria Jose Nueda, Alberto Ferrer and Ana Conesa
Maintainer: Sonia Tarazona <starazona at cipf.es>
Citation (from within R,
enter citation("NOISeq")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("NOISeq")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("NOISeq")
| R Script | NOISeq User's Guide | |
| QCreport.pdf | ||
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | DifferentialExpression, RNASeq, Sequencing, Software, Visualization |
| Version | 2.16.0 |
| In Bioconductor since | BioC 2.11 (R-2.15) (4 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.13.0), methods, Biobase(>= 2.13.11), splines (>= 3.0.1), Matrix (>= 1.2) |
| Imports | |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | metaSeq |
| Imports Me | CNVPanelizer, metaseqR |
| Suggests Me | compcodeR |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | NOISeq_2.16.0.tar.gz |
| Windows Binary | NOISeq_2.16.0.zip |
| Mac OS X 10.9 (Mavericks) | NOISeq_2.16.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/NOISeq/tree/release-3.3 |
| Package Short Url | http://bioconductor.org/packages/NOISeq/ |
| Package Downloads Report | Download Stats |
Documentation »
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