To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MSGFgui")

In most cases, you don't need to download the package archive at all.

MSGFgui

   

This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see MSGFgui.

A shiny GUI for MSGFplus

Bioconductor version: 3.3

This package makes it possible to perform analyses using the MSGFplus package in a GUI environment. Furthermore it enables the user to investigate the results using interactive plots, summary statistics and filtering. Lastly it exposes the current results to another R session so the user can seamlessly integrate the gui into other workflows.

Author: Thomas Lin Pedersen

Maintainer: Thomas Lin Pedersen <thomasp85 at gmail.com>

Citation (from within R, enter citation("MSGFgui")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MSGFgui")

Documentation

HTML R Script Using MSGFgui
PDF   Reference Manual
Text   NEWS

Details

biocViews GUI, MassSpectrometry, Proteomics, Software, Visualization
Version 1.6.2
In Bioconductor since BioC 3.0 (R-3.1) (2 years)
License GPL (>= 2)
Depends mzR, xlsx
Imports shiny, mzID(>= 1.2), MSGFplus, shinyFiles (>= 0.4.0), tools
LinkingTo
Suggests knitr, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me RforProteomics
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source MSGFgui_1.6.2.tar.gz
Windows Binary MSGFgui_1.6.2.zip
Mac OS X 10.9 (Mavericks) MSGFgui_1.6.2.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/MSGFgui/tree/release-3.3
Package Short Url http://bioconductor.org/packages/MSGFgui/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: