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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GSALightning")
In most cases, you don't need to download the package archive at all.
GSALightning
|
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see GSALightning.
Fast Permutation-based Gene Set Analysis
Bioconductor version: 3.3
GSALightning provides a fast implementation of permutation-based gene set analysis for two-sample problem. This package is particularly useful when testing simultaneously a large number of gene sets, or when a large number of permutations is necessary for more accurate p-values estimation.
Author: Billy Heung Wing Chang
Maintainer: Billy Heung Wing Chang <billyheungwing at gmail.com>
Citation (from within R,
enter citation("GSALightning")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GSALightning")
Documentation
| HTML | R Script | Vignette Title |
| Reference Manual | ||
| Text | NEWS | |
| Text | LICENSE |
Details
| biocViews | BiologicalQuestion, DifferentialExpression, GeneExpression, GeneSetEnrichment, Software, Transcription |
| Version | 1.0.2 |
| In Bioconductor since | BioC 3.3 (R-3.3) (< 6 months) |
| License | GPL (>=2) |
| Depends | R (>= 3.3.0) |
| Imports | Matrix, data.table |
| LinkingTo | |
| Suggests | knitr, rmarkdown |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | GSALightning_1.0.2.tar.gz |
| Windows Binary | GSALightning_1.0.2.zip |
| Mac OS X 10.9 (Mavericks) | GSALightning_1.0.2.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/GSALightning/tree/release-3.3 |
| Package Short Url | http://bioconductor.org/packages/GSALightning/ |
| Package Downloads Report | Download Stats |
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