counts |
Accessors for the count matrix of a IsomirDataSeq object. |
counts-method |
Accessors for the count matrix of a IsomirDataSeq object. |
counts.IsomirDataSeq |
Accessors for the count matrix of a IsomirDataSeq object. |
counts<--method |
Accessors for the count matrix of a IsomirDataSeq object. |
isoCounts |
Create count matrix with different summarizing options |
isoDE |
Differential expression analysis with DESeq2 |
IsomirDataSeq |
Class that contains all isomiRs annotation for all samples |
IsomirDataSeq-class |
Class that contains all isomiRs annotation for all samples |
IsomirDataSeqFromFiles |
'IsomirDataSeqFromFiles' loads miRNA annotation from seqbuster tool |
isoNorm |
Normalize count matrix |
isoPlot |
Plot the amount of isomiRs in different samples |
isoPlotPosition |
Plot nucleotides changes at a given position |
isoPLSDA |
Partial Least Squares Discriminant Analysis for 'IsomirDataSeq' |
isoPLSDAplot |
Plot components from isoPLSDA analysis (pairs plot) |
isoSelect |
Method to select specific miRNAs from an IsomirDataSeq object. |
isoSelect-method |
Method to select specific miRNAs from an IsomirDataSeq object. |
isoSelect.IsomirDataSeq |
Method to select specific miRNAs from an IsomirDataSeq object. |
isoTop |
Heatmap of the top expressed isomiRs |
mirData |
Example of IsomirDataSeq with human brain miRNA counts data |