# A compilation of ENCODE metadata

## Documentation for package ‘ENCODExplorer’ version 1.4.3

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

ENCODExplorer-package | ENCODExplorer
accession_df | Metadata from the ENCODE database in a R object. The tables were generated with the 'prepare_ENCODEdb' function.
clean_table | Clean a data.frame that was produced by extract_table
downloadEncode | Download files from the Internet.
ENCODExplorer | ENCODExplorer
encode_df | Metadata from the ENCODE database in a R object. The tables were generated with the 'prepare_ENCODEdb' function.
export_ENCODEdb_accession | Extract accession numbers from all the datasets of RSQLite databse in a 'data.frame'
export_ENCODEdb_matrix | Extract essential informations from the RSQLite databse in a 'list' of 'data.frame's
extract_table | Extract a data.frame corresponding to a table in ENCODE database
get_encode_types | A list of known tables from ENCODE database.
get_schemas | Extract the schemas from ENCODE's github
prepare_ENCODEdb | Create the RSQLite databse for the tables in ENCODE
queryEncode | Produce a subset of data following predefined criteria
resolveEncodeAccession | Return a 'data.frame' containing basic datasets information from an accession number
searchEncode | Simulate a query on ENCODE website and return the result as a 'data.frame'
searchToquery | Convert searchEncode output in queryEncode output.
update_ENCODExplorer | Create or update all the needed data for ENCODExplorer