Package: fishash
Title: Cell Hashing with One-Sided Fisher Test
Version: 0.99.3
Authors@R: 
    person("Jack", "Kamm", , "jackkamm@gmail.com", role = c("aut", "cre"))
Description: Assigns guide RNAs or other genetic perturbations to cells in
    single-cell sequencing experiments using a one-sided Fisher's exact test.
    Implements an iterative refitting procedure to mitigate Simpson's paradox,
    supports multiple false discovery rate correction methods
    (Benjamini-Hochberg, Benjamini-Yekutueli, and Guo & Sarkar 2020), and
    provides simulation utilities for benchmarking demultiplexing methods.
    Results are returned as SummarizedExperiment objects.
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 8.0.0
biocViews: SingleCell, Sequencing, Preprocessing, StatisticalMethod
Imports: dplyr, extraDistr, ggplot2, Matrix, methods, nnet, patchwork,
        rlang, S4Vectors, SingleCellExperiment, SummarizedExperiment,
        sparseMatrixStats
Depends: R (>= 4.5.0)
LazyData: false
Suggests: BiocStyle, ComplexHeatmap, ggExtra, glmGamPoi, knitr,
        rmarkdown, testthat (>= 3.0.0)
Config/testthat/edition: 3
VignetteBuilder: knitr
URL: https://github.com/jackkamm/fishash
BugReports: https://github.com/jackkamm/fishash/issues
git_url: https://git.bioconductor.org/packages/fishash
git_branch: devel
git_last_commit: 2454c95
git_last_commit_date: 2026-07-25
Repository: Bioconductor 3.24
Date/Publication: 2026-08-09
NeedsCompilation: no
Packaged: 2026-08-09 21:07:37 UTC; biocbuild
Author: Jack Kamm [aut, cre]
Maintainer: Jack Kamm <jackkamm@gmail.com>
Built: R 4.6.1; ; 2026-08-10 05:49:14 UTC; unix
