# Cell Hashing with One-Sided Fisher Test

## Documentation for package ‘fishash’ version 0.99.3

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

diagonal_heatmap | Plot guide count matrix as an approximately diagonal heatmap
fishash | Cell hashing by one-sided Fisher test
impute_masked_counts | For a matrix of counts, impute masked entries via an alternating algorithm
nonzero_histogram_with_weighted | Plot histogram and weighted histogram of UMI counts
simulate_guidebender | Simulate guide count matrix based on a cellbender-like model
simulate_guidebender2 | Alternative interface to 'simulate_guidebender' that tries to have more interpretable input parameters, in particular: Signal to Noise Ratio, count per cell, and fraction of noise that is endogeneous vs exogeneous. These replace the following parameters from 'simulate_guidebender' which should not be used with this function: 'd_mu_drop', 'd_mu_cell', 'rho_alpha', 'rho_beta'.
sort_columns_by_top_row | Sort matrix columns to place maxes near diagonal
tapseq_diffex | TAPseq benchmark dataset (Schraivogel et al 2020)