Package: RmzTabM
Title: R API for the mzTab-M Reference Implementation
Version: 0.99.1
Authors@R: c(
    person(given = "Nils",
           family = "Hoffmann",
	   email = "nils.hoffmann@cebitec.uni-bielefeld.de",
	   role = c("ctb"),
	   comment = c(ORCID = "0000-0002-6540-6875")),
    person(given = "Steffen",
           family = "Neumann",
	   email = "sneumann@ipb-halle.de",
	   role = c("ctb"),
	   comment = c(ORCID = "0000-0002-7899-7192")),
    person(given = "Johannes", family = "Rainer",
           email = "johannes.rainer@eurac.edu",
           role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-6977-7147")),
    person(given = "Philippine", family = "Louail",
           email = "philippine.louail@eurac.edu",
           role = c("aut"),
           comment = c(ORCID = "0009-0007-5429-6846",
	   fnd = "European Union HORIZON-MSCA-2021 project Grant No. 101073062: HUMAN – Harmonising and Unifying Blood Metabolic Analysis Networks")),
    person(given = "Gabriele", family = "Tomè",
           email = "gabriele.tome@eurac.edu",
           role = c("aut"),
           comment = c(ORCID = "0000-0002-3976-6068",
           fnd = "MetaRbolomics4Galaxy project (CUP: D53C25001030003) co-funded by the Autonomous Province of Bolzano under the Joint Projects South Tyrol–Germany 2025 program."))
	   )
Description: 
    The RmzTabM package provides functions to read and write files in the
    HUPO-PSI mzTab-M file format for reporting of results from metabolomics and
    lipidomics experiments. This package represents the reference
    implementation for mzTab-M import/export for R. Core, low level functions
    allow to format and parse the individual sections of the mzTab-M format.
    These functions are designed to be re-used by other packages implementing
    import/export of results in mzTab-M.
Depends: R (>= 4.6)
Encoding: UTF-8
License: Artistic-2.0
URL: https://github.com/RforMassSpectrometry/RmzTabM
BugReports: https://github.com/RforMassSpectrometry/RmzTabM/issues
SystemRequirements: pandoc, quarto
Imports: data.table, methods, SummarizedExperiment, stats, utils
Suggests: testthat, pkgdown, BiocStyle, knitr, rmarkdown, quarto,
        pander
VignetteBuilder: quarto
biocViews: Infrastructure, MassSpectrometry, Metabolomics, Proteomics
Roxygen: list(markdown = TRUE)
Config/roxygen2/version: 8.0.0
git_url: https://git.bioconductor.org/packages/RmzTabM
git_branch: devel
git_last_commit: 218bf98
git_last_commit_date: 2026-08-03
Repository: Bioconductor 3.24
Date/Publication: 2026-08-03
NeedsCompilation: no
Packaged: 2026-08-03 22:26:37 UTC; biocbuild
Author: Nils Hoffmann [ctb] (ORCID: <https://orcid.org/0000-0002-6540-6875>),
  Steffen Neumann [ctb] (ORCID: <https://orcid.org/0000-0002-7899-7192>),
  Johannes Rainer [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-6977-7147>),
  Philippine Louail [aut] (ORCID:
    <https://orcid.org/0009-0007-5429-6846>, fnd: European Union
    HORIZON-MSCA-2021 project Grant No. 101073062: HUMAN – Harmonising
    and Unifying Blood Metabolic Analysis Networks),
  Gabriele Tomè [aut] (ORCID: <https://orcid.org/0000-0002-3976-6068>,
    fnd: MetaRbolomics4Galaxy project (CUP: D53C25001030003) co-funded
    by the Autonomous Province of Bolzano under the Joint Projects
    South Tyrol–Germany 2025 program.)
Maintainer: Johannes Rainer <johannes.rainer@eurac.edu>
Built: R 4.6.1; ; 2026-08-04 05:55:10 UTC; unix
