Supervised mutational signatures
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Documentation for package ‘supersigs’ version 1.16.0
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| example_dt | Example dataset of mutations |
| get_signature | Function to obtain a SuperSig |
| make_matrix | Function to transform mutations into "matrix" format |
| partial_signature | Function to remove the contribution of a SuperSig |
| predict_signature | Function to predict using SuperSig object |
| process_vcf | Function to transform VCF object into "matrix" format |
| simplify_signature | Function to simplify signature representation into interpretable labels for visualization purposes |
| SuperSig | An S4 class for SuperSig |
| SuperSig-class | An S4 class for SuperSig |
| supersig_ls | Trained SuperSigs from TCGA |