Programmatic access to the DEE2 RNA expression dataset
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Documentation for package ‘getDEE2’ version 1.18.0
Help Pages
| getDEE2 | getDEE2: Programmatic access to the DEE2 RNA expression dataset |
| getDEE2Metadata | Get DEE2 Metadata |
| getDEE2_bundle | Get a DEE2 project bundle |
| list_bundles | Get a table of all completed projects at DEE2 |
| loadFullMeta | Load Full Metadata |
| loadGeneCounts | Load Gene Counts |
| loadGeneInfo | Load Gene Info |
| loadQcMx | Load Quality Control Info |
| loadSummaryMeta | Load Summary Metadata |
| loadTxCounts | Load Transcript Counts |
| loadTxInfo | Load Transcript Info |
| queryDEE2 | Query Whether a DEE2 Dataset is Available |
| query_bundles | Query whether a project bundle is available from DEE2 |
| se | Create summarizedExperiment object |
| srx_agg | Summarized run data to experiments |
| Tx2Gene | Aggregate Transcript Counts to Gene-Level Counts |