geomeTriD-package | Interactive 3D plot of epigenetic data or single cell data |
$-method | Class '"threeJsGeometry"' |
$<--method | Class '"threeJsGeometry"' |
alignCoor | Aligns two sets of genomic with x,y,z |
availableGeometries | Available Geometries |
create3dGenomicSignals | create 3d Geometry by given genomic signals |
createTADGeometries | create 3d Geometry by given TADs |
extractBackbonePositions | Extract the backbone coordinates from output of mdsPlot |
geomeTriD | Interactive 3D plot of epigenetic data or single cell data |
loopBouquetPlot | plot GInteractions |
mdsPlot | Plot genomic interactions by multi-dimensional scaling plot |
pointCluster | Perform DBSCAN clustering |
renderthreeJsViewer | Shiny bindings for threeJsViewer |
rglViewer | rgl Viewer View the 3d structure by rgl. |
show-method | Class '"threeJsGeometry"' |
smooth3dPoints | Calculate the smoothed curve for input GRanges |
threeJsGeometry | Class '"threeJsGeometry"' |
threeJsGeometry-class | Class '"threeJsGeometry"' |
threejsOutput | Shiny bindings for threeJsViewer |
threeJsViewer | threeJs Viewer The htmlwidgets viewer for threeJs. |
threeJsViewer-shiny | Shiny bindings for threeJsViewer |
view3dCells | Plot cell xyz data in 2d or 3d |
view3dStructure | Plot GRanges xyz data in 2d or 3d |