Visualization for flow cytometry

---

Documentation for package ‘flowViz’ version 1.72.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

flowViz-package	Visualization for flow cytometry
.process_flowFrame_overlay	convert a single flowFrame or a list of flowFrames to a list of flowSet
.process_overlay_flowSet	extract the respective flowFrame from each flowSet based on the given sampleName
addName	Add gate names to a flowViz plot.
addName-method	Add gate names to a flowViz plot.
addName-methods	Add gate names to a flowViz plot.
contour	Contour plots for flow data
contour-method	Contour plots for flow data
contour-methods	Contour plots for flow data
densityplot	One-dimensional density/histogram plots for flow data
densityplot-method	One-dimensional density/histogram plots for flow data
ecdfplot	Method implementing Lattice ECDF plots for flow data
ecdfplot-method	Method implementing Lattice ECDF plots for flow data
flowPlot	Standard Plots for Flow Cytometry Data
flowPlot-method	Standard Plots for Flow Cytometry Data
flowViz	Visualization for flow cytometry
flowViz.par.get	Query and set session-wide graphical parameter defaults.
flowViz.par.set	Query and set session-wide graphical parameter defaults.
glines	Drawing filter boundaries
glines-method	Drawing filter boundaries
glines-methods	Drawing filter boundaries
glpoints	Adding points within a gate to a plot
glpoints-method	Adding points within a gate to a plot
glpoints-methods	Adding points within a gate to a plot
glpolygon	Drawing filter regions
glpolygon-method	Drawing filter regions
glpolygon-methods	Drawing filter regions
gpoints	Adding points within a gate to a plot
gpoints-method	Adding points within a gate to a plot
gpoints-methods	Adding points within a gate to a plot
gpolygon	Drawing filter regions
gpolygon-method	Drawing filter regions
gpolygon-methods	Drawing filter regions
histogram-method	One-dimensional density/histogram plots for flow data
lattice-methods	Methods implementing Lattice displays for flow data
levelplot-method	Methods implementing Lattice displays for flow data
panel.densityplot.flowset.stack	One-dimensional density/histogram plots for flow data
panel.ecdfplot.flowset	Method implementing Lattice ECDF plots for flow data
panel.splom.flowframe	Method implementing Lattice scatter plot matrices for flow data.
panel.xyplot.flowframe	Methods implementing Lattice xyplots for flow data.
panel.xyplot.flowframe.time	Methods implementing Lattice xyplots for flow data.
panel.xyplot.flowset	Methods implementing Lattice xyplots for flow data.
parallel-method	Methods implementing Lattice displays for flow data
plot	Very basic plotting of flowFrames
plot-method	Very basic plotting of flowFrames
prepanel.densityplot.flowset.stack	One-dimensional density/histogram plots for flow data
prepanel.ecdfplot.flowset	Method implementing Lattice ECDF plots for flow data
prepanel.xyplot.flowframe	Methods implementing Lattice xyplots for flow data.
prepanel.xyplot.flowframe.time	Methods implementing Lattice xyplots for flow data.
prepanel.xyplot.flowset	Methods implementing Lattice xyplots for flow data.
qqmath-method	Methods implementing Lattice displays for flow data
splom	Method implementing Lattice scatter plot matrices for flow data.
splom-method	Method implementing Lattice scatter plot matrices for flow data.
timeLinePlot	Plot channel values against time
timelineplot	Plot channel values against time
timeLinePlot-method	Plot channel values against time
xyplot	Methods implementing Lattice xyplots for flow data.
xyplot-method	Methods implementing Lattice xyplots for flow data.