| flowMatch-package |
Matching cell populations and building meta-clusters and templates from a collection of FC samples. |
| Cluster |
Cluster: A class representing a cell population in FC |
| Cluster-class |
Cluster: A class representing a cell population in FC |
| ClusteredSample |
ClusteredSample: A class representing a clustered FC Sample |
| ClusteredSample-class |
ClusteredSample: A class representing a clustered FC Sample |
| ClusterMatch |
ClusterMatch: A class representing matching of cluster/meta-clusters across a pair of FC samples/templates |
| ClusterMatch-class |
ClusterMatch: A class representing matching of cluster/meta-clusters across a pair of FC samples/templates |
| create.template |
Creating a template of a collection of FC samples |
| dist.cluster |
Dissimilarity between a pair of clusters |
| dist.matrix |
Dissimilarity matrix between each pair of clusters/meta-clusters across a pair of samples/templates |
| dist.sample |
Dissimilarity between a pair of clustered FC samples |
| dist.template |
Dissimilarity between a pair of FC templates |
| flowMatch |
Matching cell populations and building meta-clusters and templates from a collection of FC samples. |
| get.center |
Cluster: A class representing a cell population in FC |
| get.center-method |
Cluster: A class representing a cell population in FC |
| get.center-method |
MetaCluster: An S4 class representing a meta-cluster (collection of biologically similar clusters). |
| get.cluster.id |
Cluster: A class representing a cell population in FC |
| get.cluster.id-method |
Cluster: A class representing a cell population in FC |
| get.clusters |
ClusteredSample: A class representing a clustered FC Sample |
| get.clusters-method |
ClusteredSample: A class representing a clustered FC Sample |
| get.clusters-method |
MetaCluster: An S4 class representing a meta-cluster (collection of biologically similar clusters). |
| get.cov |
Cluster: A class representing a cell population in FC |
| get.cov-method |
Cluster: A class representing a cell population in FC |
| get.cov-method |
MetaCluster: An S4 class representing a meta-cluster (collection of biologically similar clusters). |
| get.dimension |
ClusteredSample: A class representing a clustered FC Sample |
| get.dimension-method |
ClusteredSample: A class representing a clustered FC Sample |
| get.dimension-method |
Template: An S4 class representing a template of a group of FC Samples. |
| get.labels |
ClusteredSample: A class representing a clustered FC Sample |
| get.labels-method |
ClusteredSample: A class representing a clustered FC Sample |
| get.match12 |
ClusterMatch: A class representing matching of cluster/meta-clusters across a pair of FC samples/templates |
| get.match12-method |
ClusterMatch: A class representing matching of cluster/meta-clusters across a pair of FC samples/templates |
| get.match21 |
ClusterMatch: A class representing matching of cluster/meta-clusters across a pair of FC samples/templates |
| get.match21-method |
ClusterMatch: A class representing matching of cluster/meta-clusters across a pair of FC samples/templates |
| get.matching.cost |
ClusterMatch: A class representing matching of cluster/meta-clusters across a pair of FC samples/templates |
| get.matching.cost-method |
ClusterMatch: A class representing matching of cluster/meta-clusters across a pair of FC samples/templates |
| get.metaClusters |
Template: An S4 class representing a template of a group of FC Samples. |
| get.metaClusters-method |
Template: An S4 class representing a template of a group of FC Samples. |
| get.num.clusters |
ClusteredSample: A class representing a clustered FC Sample |
| get.num.clusters-method |
ClusteredSample: A class representing a clustered FC Sample |
| get.num.clusters-method |
MetaCluster: An S4 class representing a meta-cluster (collection of biologically similar clusters). |
| get.num.metaclusters |
Template: An S4 class representing a template of a group of FC Samples. |
| get.num.metaclusters-method |
Template: An S4 class representing a template of a group of FC Samples. |
| get.sample.id |
Cluster: A class representing a cell population in FC |
| get.sample.id-method |
Cluster: A class representing a cell population in FC |
| get.sample.id-method |
ClusteredSample: A class representing a clustered FC Sample |
| get.size |
Cluster: A class representing a cell population in FC |
| get.size-method |
Cluster: A class representing a cell population in FC |
| get.size-method |
ClusteredSample: A class representing a clustered FC Sample |
| get.size-method |
MetaCluster: An S4 class representing a meta-cluster (collection of biologically similar clusters). |
| get.size-method |
Template: An S4 class representing a template of a group of FC Samples. |
| get.template.id |
Template: An S4 class representing a template of a group of FC Samples. |
| get.template.id-method |
Template: An S4 class representing a template of a group of FC Samples. |
| get.tree |
Template: An S4 class representing a template of a group of FC Samples. |
| get.tree-method |
Template: An S4 class representing a template of a group of FC Samples. |
| get.unmatch.penalty |
ClusterMatch: A class representing matching of cluster/meta-clusters across a pair of FC samples/templates |
| get.unmatch.penalty-method |
ClusterMatch: A class representing matching of cluster/meta-clusters across a pair of FC samples/templates |
| mahalanobis.dist |
Mahanalobis Distance |
| match.clusters |
Matching of clusters/meta-clusters across FC samples/templates |
| match.clusters.dist |
Matching of clusters/meta-clusters across FC samples/templates |
| MetaCluster |
MetaCluster: An S4 class representing a meta-cluster (collection of biologically similar clusters). |
| MetaCluster-class |
MetaCluster: An S4 class representing a meta-cluster (collection of biologically similar clusters). |
| plot-method |
ClusteredSample: A class representing a clustered FC Sample |
| plot-method |
MetaCluster: An S4 class representing a meta-cluster (collection of biologically similar clusters). |
| plot-method |
Template: An S4 class representing a template of a group of FC Samples. |
| sample.id<- |
Cluster: A class representing a cell population in FC |
| sample.id<--method |
Cluster: A class representing a cell population in FC |
| show-method |
Cluster: A class representing a cell population in FC |
| show-method |
ClusterMatch: A class representing matching of cluster/meta-clusters across a pair of FC samples/templates |
| show-method |
ClusteredSample: A class representing a clustered FC Sample |
| show-method |
MetaCluster: An S4 class representing a meta-cluster (collection of biologically similar clusters). |
| show-method |
Template: An S4 class representing a template of a group of FC Samples. |
| summary-method |
Cluster: A class representing a cell population in FC |
| summary-method |
ClusterMatch: A class representing matching of cluster/meta-clusters across a pair of FC samples/templates |
| summary-method |
ClusteredSample: A class representing a clustered FC Sample |
| summary-method |
MetaCluster: An S4 class representing a meta-cluster (collection of biologically similar clusters). |
| summary-method |
Template: An S4 class representing a template of a group of FC Samples. |
| symmetric.KL |
Symmetrized Kullback-Leibler divergence |
| Template |
Template: An S4 class representing a template of a group of FC Samples. |
| Template-class |
Template: An S4 class representing a template of a group of FC Samples. |
| template.tree |
Plot the hierarchy of samples established while creating a template-tree |
| template.tree-method |
Plot the hierarchy of samples established while creating a template-tree |
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