Cell-Type-Specific Power Assessment

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Documentation for package ‘cypress’ version 1.4.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

cypress-package	cypress: cell-type-specific power assessment
AllClasses	Classes for cypress Package
asdPower	Power calculation results From ASD data
asd_nopropPower	Power calculation results From ASD data
asd_noprop_param	Simulation parameters estimated from ASD study
asd_param	Simulation parameters estimated from ASD study
ASD_prop	SimFromData example raw input data
ASD_prop_se	SimFromData example raw input data
cypress	cypress: cell-type-specific power assessment
cypress-class	Classes for cypress Package
cypress-methods	Get a slot from cypress output
cypress_out-class	Classes for cypress Package
est_out-class	Classes for cypress Package
getcypress	Get a slot from cypress output
getcypress-method	Get a slot from cypress output
GSE60424Power	Power calculation results from immune-related disease (IAD) study (GSE60424)
GSE60424_param	Simulation parameters estimated from immune-related disease (IAD) study (GSE60424)
iad_param	Power calculation results from immune-related disease (IAD) study (GSE60424)
ibdPower	Power calculation results from pediatric inflammatory bowel disease (IBD) study (GSE57945)
ibd_param	Simulation parameters estimated from pediatric inflammatory bowel disease (IBD) study (GSE57945)
ibd_propPower	Power calculation results from pediatric inflammatory bowel disease (IBD) study (GSE57945)
ibd_prop_param	Simulation parameters estimated from pediatric inflammatory bowel disease (IBD) study (GSE57945)
plotFDC	plotFDC: Generate FDC results figure
plotPower	plotPower: Generate statistical power results figure
plotTDR	plotTDR: Generate TDR results figure
quickParaASD	Simulation parameters estimated from ASD study
quickParaGSE60424	Simulation parameters estimated from immune-related disease (IAD) study (GSE60424)
quickParaIBD	Simulation parameters estimated from pediatric inflammatory bowel disease (IBD) study (GSE57945)
quickPower	Obtain pre-calculated results from three available datasets
quickPowerASD	Power calculation results From ASD data
quickPowerGSE60424	Power calculation results from immune-related disease (IAD) study (GSE60424)
quickPowerIBD	Power calculation results from pediatric inflammatory bowel disease (IBD) study (GSE57945)
setcypress	Get a slot from cypress output
setcypress-method	Get a slot from cypress output
show-method	Get a slot from cypress output
simFromData	Power calculation results on input data
simFromParam	Power calculation results on pre-calculated parameters