Functional Gene Networks derived from biological enrichment analyses

---

Documentation for package ‘FGNet’ version 3.42.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

FGNet-package	Functional gene networks derived from biological enrichment analyses
adjMatrix	Transforms FEA output into incidence matrices.
analyzeNetwork	Analyze Functional Network
clustersDistance	Plots distances between metagroups.
fea2incidMat	Transforms FEA output into incidence matrices.
fea_gage	FEA - GAGE
fea_gtLinker	FEA - Gene-Term Linker
fea_gtLinker_getResults	FEA - Gene-Term Linker
FEA_tools	FGNet data
fea_topGO	FEA - topGO
FGNet	Functional gene networks derived from biological enrichment analyses
FGNet_GUI	FGNet graphical user interface
FGNet_report	FGNet report
format_david	Format DAVID output
format_results	Format FEA results from external tools.
functionalNetwork	Creates and plots the functional gene network.
getResults_david	Format DAVID output
getResults_gtLinker	FEA - Gene-Term Linker
getTerms	Get terms in the metagroups/clusters.
GOEvidenceCodes	FGNet data
groupTypes	FGNet data
intersectionNetwork	Creates and plots the functional gene network.
keywordsTerm	Select keyword term
organisms	FGNet data
plotGoAncestors	Plot GO term ancestors
plotMetagroupsDistance	Plots distances between metagroups.
query_gtLinker	FEA - Gene-Term Linker
readGeneTermSets	Read gene-term sets
report_david	FGNet report
report_gtLinker	FGNet report
toMatrix	Transforms FEA output into incidence matrices.