Low Dimensions projection of cytometry samples

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Documentation for package ‘CytoMDS’ version 1.4.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

as.matrix-method	DistSum class
channelSummaryStats	Summary statistics per channel computation
colnames-method	DistSum class
colnames<--method	DistSum class
computeMetricMDS	metric MDS projection of sample
dim-method	DistSum class
dimnames-method	DistSum class
dimnames<--method	DistSum class
distByFeature	DistSum class
DistSum	DistSum class
DistSum-class	DistSum class
DistSum-method	DistSum class
eigenVals	MDS class
EMDDist	Calculate Earth Mover's distance between two samples
featureNames-method	DistSum class
featureNames<--method	DistSum class
ggplotDistFeatureImportance	Plot of feature relative importance in distance
ggplotMarginalDensities	Plot of channel intensity marginal densities
ggplotSampleMDS	Plot of Metric MDS object
ggplotSampleMDSShepard	Plot of Metric MDS object - Shepard diagram
ggplotSampleMDSWrapBiplots	SampleMDS biplot wrapping
GoF	MDS class
MDS-class	MDS class
ncol-method	DistSum class
nDim	MDS class
nFeatures	DistSum class
nPoints	MDS class
nrow-method	DistSum class
pairwiseEMDDist	Pairwise Earth Mover's Distance calculation
pctvar	MDS class
projDist	MDS class
projections	MDS class
pwDist	MDS class
rownames-method	DistSum class
rownames<--method	DistSum class
RSq	MDS class
RSqVec	MDS class
show-method	DistSum class
show-method	MDS class
smacofRes	MDS class
spp	MDS class
stress	MDS class
[-method	DistSum class