SpatialExperiment with tidy principles

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Documentation for package ‘tidySpatialExperiment’ version 1.4.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

add_count	Count the observations in each group
add_count.SpatialExperiment	Count the observations in each group
aggregate_cells	Aggregate cells
arrange	Order rows using column values
as_tibble	Coerce lists, matrices, and more to data frames
as_tibble.SpatialExperiment	Coerce lists, matrices, and more to data frames
bind_cols	Efficiently bind multiple data frames by row and column
bind_cols.SpatialExperiment	Efficiently bind multiple data frames by row and column
bind_rows	Efficiently bind multiple data frames by row and column
bind_rows.SpatialExperiment	Efficiently bind multiple data frames by row and column
count	Count the observations in each group
demo_brush_data	Demo brush data
demo_select_data	Demo select data
distinct	Keep distinct/unique rows
ellipse	Ellipse Gating Function
extract	Extract a character column into multiple columns using regular expression groups
extract.SpatialExperiment	Extract a character column into multiple columns using regular expression groups
filter	Keep rows that match a condition
filter.SpatialExperiment	Keep rows that match a condition
formatting	Printing tibbles
gate	Interactively gate cells by spatial coordinates
gate_interactive	Gate interactive
gate_programmatic	Gate spatial data with pre-recorded lasso selection coordinates
ggplot	Create a new 'ggplot' from a 'tidySpatialExperiment'
glimpse	Get a glimpse of your data
group_by	Group by one or more variables
inner_join	Mutating joins
inner_join.SpatialExperiment	Mutating joins
join_features	Extract and join information for features.
left_join	Mutating joins
left_join.SpatialExperiment	Mutating joins
mutate	Create, modify, and delete columns
mutate.SpatialExperiment	Create, modify, and delete columns
nest	Nest rows into a list-column of data frames
nest.SpatialExperiment	Nest rows into a list-column of data frames
pivot_longer	Pivot data from wide to long
plot_ly	Initiate a plotly visualization
plot_ly.SpatialExperiment	Initiate a plotly visualization
print	Printing tibbles
print.SpatialExperiment	Printing tibbles
pull	Extract a single column
rectangle	Rectangle Gating Function
rename	Rename columns
right_join	Mutating joins
right_join.SpatialExperiment	Mutating joins
rowwise	Group input by rows
sample_frac	Sample n rows from a table
sample_frac.SpatialExperiment	Sample n rows from a table
sample_n	Sample n rows from a table
sample_n.SpatialExperiment	Sample n rows from a table
select	Keep or drop columns using their names and types
select.SpatialExperiment	Keep or drop columns using their names and types
separate	Separate a character column into multiple columns with a regular expression or numeric locations
separate.SpatialExperiment	Separate a character column into multiple columns with a regular expression or numeric locations
slice	Subset rows using their positions
slice_head	Subset rows using their positions
slice_max	Subset rows using their positions
slice_min	Subset rows using their positions
slice_sample	Subset rows using their positions
slice_tail	Subset rows using their positions
summarise	Summarise each group down to one row
summarize	Summarise each group down to one row
tbl_format_header	Format the header of a tibble
tbl_format_header.tidySpatialExperiment	Format the header of a tibble
unite	Unite multiple columns into one by pasting strings together
unite.SpatialExperiment	Unite multiple columns into one by pasting strings together
unnest	Unnest a list-column of data frames into rows and columns
unnest.tidySpatialExperiment_nested	Unnest a list-column of data frames into rows and columns
unnest_single_cell_experiment	Unnest a list-column of data frames into rows and columns