A Tool for Spatial Multi-sample Comparisons

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Documentation for package ‘spatialFDA’ version 1.0.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

.dfToppp	Convert SpatialExperiment object to ppp object
.extractMetric	Compute a spatial metric on a SpatialExperiment object
.loadExample	load Example dataset from Damond et al. (2019)
.speToDf	Transform a SpatialExperiment into a dataframe
calcCrossMetricPerFov	Calculate cross spatial metrics for all combinations per FOV
calcMetricPerFov	Calculate a spatial metric on a 'SpatialExperiment' object per field of view
functionalGam	General additive model with functional response
functionalPCA	Functional Principal Component Analysis
plotCrossFOV	Creates a nXn plot of the cross metrics per sample
plotCrossMetricPerFov	Plot a cross type spatial metric per field of view
plotFbPlot	Functional boxplot of spatstat curves
plotFpca	Plot a biplot from an fPCA analysis
plotMdl	Plot a pffr model object
plotMetricPerFov	Plot a spatial metric per field of view
prepData	Prepare data from calcMetricRes to be in the right format for FDA
print.fpca	print the fPCA results