An R package for the easy provision of simple but complete
tab-delimited genomic annotation from a variety of sources and
organisms
![[R logo]](../../../doc/html/Rlogo.svg)
![[Up]](../../../doc/html/left.jpg)
![[Top]](../../../doc/html/up.jpg)
Documentation for package ‘sitadela’ version 1.16.0
Help Pages
| addAnnotation | Build a local genomic regions annotation database |
| addCustomAnnotation | Import custom annotation to existing or new sitadela annotation database from GTF file |
| getAnnotation | Annotation downloader |
| getDbPath | Get and set sitadela default database path |
| getInstalledAnnotations | List installed sitadela annotations |
| getSeqInfo | Retrieve sequence length and other information |
| getUserAnnotations | List installed custom user-defined sitadela annotations |
| importCustomAnnotation | Import a metaseqR2 custom annotation element |
| loadAnnotation | Load a sitadela simple annotation element |
| removeAnnotation | Remove an annotation from a sitadela database |
| setDbPath | Get and set sitadela default database path |
| testCustomBuild | Query and database build testing functions |
| testCustomGtf | Query and database build testing functions |
| testEnsembl | Query and database build testing functions |
| testEnsemblSimple | Query and database build testing functions |
| testKnownBuild | Query and database build testing functions |
| testUcsc | Query and database build testing functions |
| testUcscAll | Query and database build testing functions |
| testUcscUtr | Query and database build testing functions |
| testUcscUtrAll | Query and database build testing functions |