Scifer: Single-Cell Immunoglobulin Filtering of Sanger Sequences

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Documentation for package ‘scifer’ version 1.10.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

scifer-package	Scifer: Single-Cell Immunoglobulin Filtering of Sanger Sequences
df_to_fasta	Fasta file creation from dataframe columns and/or vectors.
fcs_plot	Plot flow data from index sorted cells
fcs_processing	Extract index sorting from flow cytometry data
igblast	Run IgBLAST python wrapper
quality_report	Generate general and individualized reports
scifer	Scifer: Single-Cell Immunoglobulin Filtering of Sanger Sequences
secondary_peaks	Check for secondary peaks in a sangerseq object
summarise_abi_file	Create a summary of a single ABI sequencing file
summarise_quality	Summary table of quality measurements from Sanger sequencing