epidecodeR: a functional exploration tool for epigenetic and
epitranscriptomic regulation
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Documentation for package ‘epidecodeR’ version 1.16.0
Help Pages
| epidecodeR | Analysis function for generating epidecodeR object. This function distributes dysregulated genes into user defined groups and calculates cumulative probabilities and ANOVA test statistics for significance testing in difference of log2FC means between groups of dysregulated genes |
| epidecodeR-class | epidecodeR object - a S4 class object |
| get_empirical_table | get_empirical_table method |
| get_empirical_table-method | get_empirical_table method |
| get_eventcounts | get_eventcounts method |
| get_eventcounts-method | get_eventcounts method |
| get_grpcounts | get_grpcounts method |
| get_grpcounts-method | get_grpcounts method |
| get_grptables | get_grptables method |
| get_grptables-method | get_grptables method |
| get_signtest | get_signtest method |
| get_signtest-method | get_signtest method |
| get_theoretical_table | get_theoretical_table method |
| get_theoretical_table-method | get_theoretical_table method |
| makeplot | Generate CDF plot using epidecodeR object generated using epidecodeR function |
| plot_test | Generates boxplot of distribution of log2FC of dysregulated genes and adjusted P value of signficance test of difference in mean log2FC between groups computed using one-way ANOVA test |