Statistical Inferences with MeDIP-seq Data (SIMD) to infer the methylation level for each CpG site

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Documentation for package ‘SIMD’ version 1.26.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

SIMD-package	A method to infer the methylation expression level for each CpG sites.
EMalgorithm	EM algorithm to infer CpG sites.
emalgth	Calculate the probability on condition that the sums equal to 1.
emalgth1	Calculate the probability on condition that the sums more than 1.
EMtest	Inferring the methylation expression level of single sites.
probBinom	Compute P-values for Medip-seq and MRE-seq data.