Differential pattern analysis for Ribo-seq data

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Documentation for package ‘RiboDiPA’ version 1.16.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

binTrack	Visualization: generating tracks for 'igvR' (per bin)
bpTrack	Visualization: generating tracks for 'igvR' (per bp)
data.binned	An example of binned P-sites data
data.psite	An example of P-site coverage data
dataBinning	Data binning
diffPatternTest	Differential pattern analysis of Ribo-seq data
diffPatternTestExon	Main function for differential pattern analysis of exon-binned Ribo-seq data
exonTrack	Visualization: generating tracks for 'igvR' (per exon)
normFactor	Size factors for normalization by sequencing depth
plotTest	Plotting ribosome footprint data from mapped P-sites at the bin level.
plotTrack	Plotting ribosome footprint data at the mapped P-site level
psiteCal	P-site position of reads
psiteMapping	P-site mapping
result.exon	An example of exon-level differential pattern analysis result
result.pst	An example of differential pattern analysis result
RiboDiPA	A wrapper function for the RiboDiPA pipeline