ITALICS

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Documentation for package ‘ITALICS’ version 2.67.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

addInfo	add info to quartet annotation
analyseCGH	GLAD analysis
fromQuartetToSnp	Compute the copy number of each SNP from its quartets intensities
fromSnpToQuartet	Function to get from snp to quartet
getConfDat	Elimination of badly predicted probes
getCorrection	Correction
getEffet	Effet
getModel	Regression Model
getQuartet	Function to retrieve the information of each quartet
getResidu	Correction
getSnpInfo	Function to retrieve the chromosome and the position of each SNP on a given Affymetrix SNP array
ITALICS	Affymetrix SNP chip normalization
Italics	Affymetrix SNP chip normalization
italics	Affymetrix SNP chip normalization
readQuartetCopyNb	Read PM probes of selected quartets and compute the quartet intensity
trainITALICS	ITALICS training
trainItalics	ITALICS training
trainitalics	ITALICS training