# GO-terms Semantic Similarity Measures

## Documentation for package ‘GOSemSim’ version 2.34.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

buildGOmap | buildGOmap
clusterSim | Semantic Similarity Between Two Gene Clusters
combineScores | combining similarity matrix to similarity score
geneSim | Semantic Similarity Between two Genes
GO | Information content of GO terms
godata | godata
GOSemSimDATA-class | Class "GOSemSimDATA" This class stores IC and gene to go mapping for semantic similarity measurement
goSim | Semantic Similarity Between Two GO Terms
gotbl | Information content of GO terms
go_term_table | Information content of GO terms
infoContentMethod | information content based methods
load_OrgDb | load_OrgDb
mclusterSim | Pairwise Semantic Similarities for a List of Gene Clusters
mgeneSim | Pairwise Semantic Similarity for a List of Genes
mgoSim | Semantic Similarity Between two GO terms lists
parse_gff | read.gaf
read.blast2go | read.blast2go
read.gaf | read.gaf
show-method | Class "GOSemSimDATA" This class stores IC and gene to go mapping for semantic similarity measurement
tcss_cutoff | determine the topological cutoff for TCSS method
termSim | termSim
wangMethod_internal | wangMethod