To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MafDb.ALL.wgs.phase3.release.v5b.20130502")

In most cases, you don't need to download the package archive at all.

MafDb.ALL.wgs.phase3.release.v5b.20130502

   

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see MafDb.ALL.wgs.phase3.release.v5b.20130502.

Minor allele frequency data from 1000 Genomes

Bioconductor version: 3.2

Store minor allele frequency data frozen from the 1000 Genomes Project.

Author: Robert Castelo [aut, cre]

Maintainer: Robert Castelo <robert.castelo at upf.edu>

Citation (from within R, enter citation("MafDb.ALL.wgs.phase3.release.v5b.20130502")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MafDb.ALL.wgs.phase3.release.v5b.20130502")

Documentation

PDF   Reference Manual
Text   NEWS

Details

biocViews AnnotationData, Genetics, Homo_sapiens, MafDb
Version 3.2.0
License Artistic-2.0
Depends R (>= 3.0.0), VariantFiltering(>= 1.5.23)
Imports RSQLite (>= 1.0.0), Biobase, AnnotationDbi, IRanges, Biostrings, Rsamtools, GenomicRanges, VariantAnnotation
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source MafDb.ALL.wgs.phase3.release.v5b.20130502_3.2.0.tar.gz
Windows Binary
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Package Short Url http://bioconductor.org/packages/MafDb.ALL.wgs.phase3.release.v5b.20130502/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

Fred Hutchinson Cancer Research Center