CHANGES IN VERSION 1.7.1 ------------------------ Notes o Fixed a bug in svAnnotation. CHANGES IN VERSION 1.2.0 ------------------------ Notes o Add support to SV prediction programs Lumpy and softSearch. o Modify methodsMerge to make it more robust. o Modify all the read functions to coordinate methodsMerge. CHANGES IN VERSION 1.1.4 ------------------------ Notes o Modify svAnnotation and geneAnnotation to deal with more versatile genome annotation files. o Modify plotChromosome to deal with exceptions. CHANGES IN VERSION 1.1.3 ------------------------ Notes o Modify readDelly and readSvseq to deal with exceptions in the output of SV prediction programs. o Add more parameters to the function 'methodsMerge' to make it more robust. CHANGES IN VERSION 1.1.2 ------------------------ Notes o Modify readPindel and readBreakDancer to deal with exceptions in the output of SV prediction programs. CHANGES IN VERSION 1.0.1 ------------------------ Notes o Add more parameters to the function 'methodsMerge' to accept user defined thresholds. CHANGES IN VERSION 0.99.3 ------------------------ Notes o Improvement of the vigenette to make it more comprehensive. o Removal of useless example dataset.