To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("snpStats")

In most cases, you don't need to download the package archive at all.

snpStats

   

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see snpStats.

SnpMatrix and XSnpMatrix classes and methods

Bioconductor version: 3.2

Classes and statistical methods for large SNP association studies. This extends the earlier snpMatrix package, allowing for uncertainty in genotypes.

Author: David Clayton <dc208 at cam.ac.uk>

Maintainer: David Clayton <dc208 at cam.ac.uk>

Citation (from within R, enter citation("snpStats")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("snpStats")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("snpStats")

 

PDF Data input
PDF Fst
PDF Imputation and meta-analysis
PDF LD statistics
PDF Principal components analysis
PDF snpMatrix-differences
PDF snpStats introduction
PDF TDT tests
PDF   Reference Manual

Details

biocViews GeneticVariability, Microarray, SNP, Software
Version 1.20.0
In Bioconductor since BioC 2.8 (R-2.13) (5 years)
License GPL-3
Depends R (>= 2.10.0), survival, Matrix, methods
Imports graphics, grDevices, stats, utils, BiocGenerics, zlibbioc
LinkingTo
Suggests hexbin
SystemRequirements
Enhances
URL
Depends On Me GGBase, GGdata, ggtut
Imports Me FunciSNP, GGtools, gQTLstats, gwascat, ldblock, MEAL
Suggests Me crlmm, GWASTools, VariantAnnotation
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source snpStats_1.20.0.tar.gz
Windows Binary snpStats_1.20.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) snpStats_1.20.0.tgz
Mac OS X 10.9 (Mavericks) snpStats_1.20.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/snpStats/tree/release-3.2
Package Short Url http://bioconductor.org/packages/snpStats/
Package Downloads Report Download Stats

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