To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ggtree")

In most cases, you don't need to download the package archive at all.

ggtree

   

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see ggtree.

a phylogenetic tree viewer for different types of tree annotations

Bioconductor version: 3.2

ggtree extends the ggplot2 plotting system which implemented the grammar of graphics. ggtree is designed for visualizing phylogenetic tree and different types of associated annotation data.

Author: Guangchuang Yu and Tommy Tsan-Yuk Lam

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Citation (from within R, enter citation("ggtree")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ggtree")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ggtree")

 

HTML Advance Tree Annotation
HTML ggtree: a phylogenetic tree viewer for different types of tree annotations
HTML Tree Annotation
HTML Tree Data Import
HTML Tree Manipulation
HTML Tree Visualization
PDF   Reference Manual
Text   NEWS

Details

biocViews Alignment, Annotation, Clustering, DataImport, MultipleSequenceAlignment, ReproducibleResearch, Software, Visualization
Version 1.2.17
In Bioconductor since BioC 3.1 (R-3.2) (1 year)
License Artistic-2.0
Depends R (>= 3.2.0), ggplot2 (>= 2.0.0)
Imports ape, Biostrings, grid, jsonlite, magrittr, methods, stats4, tidyr
LinkingTo
Suggests colorspace, EBImage, gridExtra, knitr, phylobase, phytools, phangorn, rmarkdown, scales, testthat
SystemRequirements
Enhances
URL https://github.com/GuangchuangYu/ggtree
BugReports https://github.com/GuangchuangYu/ggtree/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source ggtree_1.2.17.tar.gz
Windows Binary ggtree_1.2.17.zip
Mac OS X 10.6 (Snow Leopard) ggtree_1.2.1.tgz
Mac OS X 10.9 (Mavericks) ggtree_1.2.17.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/ggtree/tree/release-3.2
Package Short Url http://bioconductor.org/packages/ggtree/
Package Downloads Report Download Stats

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