To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("derfinderPlot")

In most cases, you don't need to download the package archive at all.

derfinderPlot

   

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see derfinderPlot.

Plotting functions for derfinder

Bioconductor version: 3.2

This package provides plotting functions for results from the derfinder package.

Author: Leonardo Collado-Torres [aut, cre], Andrew E. Jaffe [aut], Jeffrey T. Leek [aut, ths]

Maintainer: Leonardo Collado-Torres <lcollado at jhu.edu>

Citation (from within R, enter citation("derfinderPlot")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("derfinderPlot")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("derfinderPlot")

 

HTML Introduction to derfinderPlot
PDF   Reference Manual
Text   NEWS

Details

biocViews DifferentialExpression, RNASeq, Sequencing, Software, Visualization
Version 1.4.1
In Bioconductor since BioC 3.0 (R-3.1) (1.5 years)
License Artistic-2.0
Depends R (>= 3.2)
Imports derfinder(>= 1.1.0), GenomeInfoDb(>= 1.3.3), GenomicFeatures, GenomicRanges(>= 1.17.40), ggbio(>= 1.13.13), ggplot2, IRanges(>= 1.99.28), limma, plyr, RColorBrewer, reshape2, scales
LinkingTo
Suggests biovizBase, bumphunter(>= 1.7.6), derfinderData(>= 0.99.0), devtools (>= 1.6), knitcitations (>= 1.0.1), knitr (>= 1.6), BiocStyle, org.Hs.eg.db, rmarkdown (>= 0.3.3), testthat, TxDb.Hsapiens.UCSC.hg19.knownGene
SystemRequirements
Enhances
URL https://github.com/leekgroup/derfinderPlot
BugReports https://github.com/leekgroup/derfinderPlot/issues
Depends On Me
Imports Me regionReport
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source derfinderPlot_1.4.1.tar.gz
Windows Binary derfinderPlot_1.4.1.zip
Mac OS X 10.6 (Snow Leopard) derfinderPlot_1.4.1.tgz
Mac OS X 10.9 (Mavericks) derfinderPlot_1.4.1.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/derfinderPlot/tree/release-3.2
Package Short Url http://bioconductor.org/packages/derfinderPlot/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

Fred Hutchinson Cancer Research Center