To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("chromDraw")

In most cases, you don't need to download the package archive at all.

chromDraw

   

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see chromDraw.

chromDraw an R package for visualization of linear and circular karyotypes.

Bioconductor version: 3.2

Package chromDraw is a simple package for linear and circular type of karyotype visualization. The linear type of visualization is usually used for demonstrating chromosomes structures in karyotype and the circular type of visualization is used for comparing of karyotypes between each other. This tool has own input data format or genomicRanges structure can be used as input. Each chromosome containing definition of blocks and centromere position. Output file formats are *.eps and *.svg.

Author: Jan Janecka, Ing., Mgr. CEITEC Masaryk University

Maintainer: Jan Janecka <jan.janecka at ceitec.muni.cz>

Citation (from within R, enter citation("chromDraw")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("chromDraw")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("chromDraw")

 

PDF chromDraw
PDF   Reference Manual
Text   NEWS

Details

biocViews Software
Version 1.2.0
In Bioconductor since BioC 3.1 (R-3.2) (1 year)
License GPL-3
Depends R (>= 3.0.0)
Imports Rcpp (>= 0.11.1), GenomicRanges(>= 1.17.46)
LinkingTo Rcpp
Suggests
SystemRequirements Rtools (>= 3.1)
Enhances
URL www.plantcytogenomics.org/chromDraw
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source chromDraw_1.2.0.tar.gz
Windows Binary chromDraw_1.2.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) chromDraw_1.2.0.tgz
Mac OS X 10.9 (Mavericks) chromDraw_1.2.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/chromDraw/tree/release-3.2
Package Short Url http://bioconductor.org/packages/chromDraw/
Package Downloads Report Download Stats

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