To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RNAither")

In most cases, you don't need to download the package archive at all.

RNAither

   

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see RNAither.

Statistical analysis of high-throughput RNAi screens

Bioconductor version: 3.2

RNAither analyzes cell-based RNAi screens, and includes quality assessment, customizable normalization and statistical tests, leading to lists of significant genes and biological processes.

Author: Nora Rieber and Lars Kaderali, University of Heidelberg, Viroquant Research Group Modeling, Im Neuenheimer Feld 267, 69120 Heidelberg, Germany

Maintainer: Lars Kaderali <lars.kaderali at tu-dresden.de>

Citation (from within R, enter citation("RNAither")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RNAither")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RNAither")

 

PDF RNAither, an automated pipeline for the statistical analysis of high-throughput RNAi screens
PDF   Reference Manual

Details

biocViews Annotation, CellBasedAssays, GO, Preprocessing, QualityControl, Software, Visualization
Version 2.18.7
In Bioconductor since BioC 2.3 (R-2.8) (7.5 years)
License Artistic-2.0
Depends R (>= 2.10), topGO, RankProd, prada
Imports geneplotter, limma, biomaRt, car, splots, methods
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source RNAither_2.18.7.tar.gz
Windows Binary RNAither_2.18.7.zip
Mac OS X 10.6 (Snow Leopard) RNAither_2.18.0.tgz
Mac OS X 10.9 (Mavericks) RNAither_2.18.7.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/RNAither/tree/release-3.2
Package Short Url http://bioconductor.org/packages/RNAither/
Package Downloads Report Download Stats

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