To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("HiTC")

In most cases, you don't need to download the package archive at all.

HiTC

   

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see HiTC.

High Throughput Chromosome Conformation Capture analysis

Bioconductor version: 3.2

The HiTC package was developed to explore high-throughput 'C' data such as 5C or Hi-C. Dedicated R classes as well as standard methods for quality controls, normalization, visualization, and further analysis are also provided.

Author: Nicolas Servant

Maintainer: Nicolas Servant <nicolas.servant at curie.fr>

Citation (from within R, enter citation("HiTC")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("HiTC")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HiTC")

 

PDF Hi-C data analysis using HiTC
PDF Introduction to HiTC package
PDF   Reference Manual
Text   NEWS

Details

biocViews HiC, HighThroughputSequencing, Sequencing, Software
Version 1.14.0
In Bioconductor since BioC 2.10 (R-2.15) (4 years)
License Artistic-2.0
Depends R (>= 2.15.0), methods, IRanges, GenomicRanges
Imports Biostrings, graphics, grDevices, rtracklayer, RColorBrewer, Matrix, parallel, GenomeInfoDb
LinkingTo
Suggests BiocStyle, HiCDataHumanIMR90
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me HiCDataHumanIMR90
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source HiTC_1.14.0.tar.gz
Windows Binary HiTC_1.14.0.zip
Mac OS X 10.6 (Snow Leopard) HiTC_1.14.0.tgz
Mac OS X 10.9 (Mavericks) HiTC_1.14.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/HiTC/tree/release-3.2
Package Short Url http://bioconductor.org/packages/HiTC/
Package Downloads Report Download Stats

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