# Integrating microRNA expression into signaling pathways for pathway analysis

## Documentation for package ‘mirIntegrator’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

augmented_pathways | Signaling pathways augmented with miRNA.
GSE43592_miRNA | Top table of preprocessed miRNA of GSE43592 dataset.
GSE43592_mRNA | Top table of preprocessed mRNA of GSE43592 dataset.
integrate_mir | Produce augmented pathways
kegg_pathways | List of KEGG signaling pathways of human.
mirTarBase | MicroRNA-target interactions in human.
names_pathways | List of KEGG signaling pathways' names.
pathways2pdf | Export augmented pathways to pdf
plot_augmented_pathway | Plotting of augmented pathway
plot_change | Plotting the change in pathways order
smallest_pathway | Get the smallest pathway