PAPi-package |
Pathway Activity Profiling |
addKeggCodes |
In a data frame, it substitutes the name of compounds by their respective KEGG codes. |
buildDatabase |
Build a local database containing the required information from KEGG (Kyoto Encyclopedia of Genes and Genomes) database. |
keggLibrary |
An example of the library mapping name of compounds to their respective KEGG codes. |
metabolomicsData |
An example of metabolomics data set used by 'addKeggCodes'. |
PAPi |
Pathway Activity Profiling |
papi |
papi - Pathway Activity Profiling |
papiData |
An example of the data frame produced by 'addKeggCodes' and used by 'papi'. |
papiHtest |
Apply ANOVA or t-test to results produced by 'papi'. |
papiLine |
papiLine generates a line graph of results obtained using 'papi' or 'papiHtest'. |
papiResults |
An example of the data frame produced by 'papi'. |