Package: InPAS
Type: Package
Title: Identification of Novel alternative PolyAdenylation Sites (PAS)
Version: 1.2.0
Date: 2015-08-19
Authors@R: c(person("Jianhong Ou", "Developer", role = c("aut", "cre"),
        email = "jianhong.ou@umassmed.edu"), person("Lihua Julie Zhu",
        "Developer", role = "aut", email = "Julie.Zhu@umassmed.edu"))
Author: Jianhong Ou, Sung Mi Park, Michael R. Green and Lihua Julie Zhu
Maintainer: Jianhong Ou <jianhong.ou@umassmed.edu>
Description: Alternative polyadenylation (APA) is one of the important 
             post-transcriptional regulation mechanisms which occurs in 
             most human genes. InPAS facilitates the discovery of novel 
             APA sites from RNAseq data. It leverages cleanUpdTSeq to fine 
             tune identified APA sites.
biocViews: RNASeq, Sequencing, AlternativeSplicing, Coverage,
        DifferentialSplicing, GeneRegulation, Transcription
License: GPL (>= 2)
Lazyload: yes
Imports: AnnotationDbi, BSgenome, cleanUpdTSeq, Gviz, seqinr,
        preprocessCore, IRanges, GenomeInfoDb, depmixS4, limma,
        BiocParallel
Depends: R (>= 3.1), methods, Biobase, GenomicRanges, GenomicFeatures,
        S4Vectors
Suggests: RUnit, BiocGenerics, BiocStyle, BSgenome.Hsapiens.UCSC.hg19,
        BSgenome.Mmusculus.UCSC.mm10, org.Hs.eg.db, org.Mm.eg.db,
        TxDb.Hsapiens.UCSC.hg19.knownGene,
        TxDb.Mmusculus.UCSC.mm10.knownGene, rtracklayer, knitr
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2015-10-15 03:51:02 UTC; biocbuild
Built: R 3.2.2; ; 2015-10-15 17:04:25 UTC; unix
