Platform for integrative analysis of omics data

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Documentation for package ‘piano’ version 2.20.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

piano-package	Piano - Platform for Integrative ANalysis of Omics data
consensusHeatmap	Heatmap of top consensus gene sets
consensusScores	Top consensus gene sets and boxplot
diffExp	Perform differential expression analysis
exploreGSAres	Explore GSA results
extractFactors	Extracts 'ArrayData' factors
geneSetSummary	Gene set summary
GSAheatmap	Heatmap of top significant gene sets
GSAsummaryTable	Gene set analysis summary table
gsa_input	Random input data for gene set analysis
gsa_results	Gene set analysis result data
loadGSC	Load a gene set collection
loadMAdata	Load and preprocess microarray data
networkPlot	Gene set network plot
networkPlot2	Gene set network plot
piano	Piano - Platform for Integrative ANalysis of Omics data
polarPlot	Polar plot
runGSA	Gene set analysis
runGSAhyper	Gene set analysis with Fisher's exact test
runQC	Run quality control
writeFilesForKiwi	Write files for Kiwi