Infer locally aneuploid cells using single cell RNA-seq data

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Documentation for package ‘partCNV’ version 1.2.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

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GetCytoLocation	Get exact location of the interested cytogenetics feature
GetExprCountCyto	Get normalized gene expression counts for selected genes
Hg38_gtf	GTF data for Hg38 genome
NormalizeCounts	Extract and normalize gene expression counts for a SingleCellExperiment object
partCNV	Infer cells that are locally aneuploid using partCNV
partCNVH	Infer cells that are locally aneuploid using partCNVH
SimData	Simulation data to examplify the usage of the method
SimDataSce	Simulation SingleCellExperiment object to examplify the usage of the method