aggregateFR | Aggregating the outcome of several experiments or conditions. |
aggregateTrackedCells | Aggregate trackedCells Objects |
CellMig | The CellMig Class. |
CellMig-class | The CellMig Class. |
CellMigPCA | PCA |
CellMigPCAclust | PCA Clusters |
CellMigPCAclustALL | PCA Clusters of different conditions |
CellTracker | Compute Cell Tracks |
ComputeTracksStats | Compute Tracks Stats |
DiAutoCor | Direction AutoCorrelation |
DiRatio | Directionality Table |
DiRatioPlot | Directionality Ratio plots |
EstimateDiameterRange | Detect Paricle Diameters in a Numeric matrix |
FilterTrackedCells | Filter an Aggregated Table of Cell Tracks |
FinRes | Final Results |
FMI | Forward Migration Index |
ForwardMigration | Forward Migration |
getAvailableAggrMetrics | Get Available Aggregate Cell Metrics |
getCellImages | Method getCellImages |
getCellImages-method | Method getCellImages |
getCellMigSlot | Method getCellMigSlot |
getCellMigSlot-method | Method getCellMigSlot |
getCellsMeta | Get MetaData |
getCellsStats | Get Cell migration stats |
getCellTrackMeta | Method getCellTrackMeta |
getCellTrackMeta-method | Method getCellTrackMeta |
getCellTracks | Method getCellTracks |
getCellTracks-method | Method getCellTracks |
getCellTrackStats | Method getCellTrackStats |
getCellTrackStats-method | Method getCellTrackStats |
getDACtable | Getting the Direction AutoCorrelation |
getDiRatio | Getting the Directionality Table |
getFMItable | Getting the Forward Migration Index |
getForMigtable | Getting the Forward Migration |
getImageCentroids | Method getImageCentroids |
getImageCentroids-method | Method getImageCentroids |
getImageStacks | Get Image Stacks |
getMSDtable | Getting the Mean Square Displacement |
getOptimizedParameters | Get Auto Optimized Parameters |
getOptimizedParams | Method getOptimizedParams |
getOptimizedParams-method | Method getOptimizedParams |
getPerAndSpeed | Getting the table of Persistence and Speed. |
getPopulationStats | Get Cell population stats |
getProcessedImages | Method getProcessedImages |
getProcessedImages-method | Method getProcessedImages |
getProcessingStatus | Method getProcessingStatus |
getProcessingStatus-method | Method getProcessingStatus |
getResults | Final Results |
getTracks | Get Track Data |
getVACtable | Getting the Velocity AutoCorrelation |
initialize-method | The CellMig Class. |
initialize-method | The trackedCells Class. |
LoadTiff | Import Image from TIFF |
MSD | Mean Square Displacement |
OptimizeParams | Optimize Detection Params |
PerAndSpeed | Persistence and Speed |
plot3DAllTracks | A 3D rose-plot of all cells |
plot3DTracks | A 3D rose-plot |
plotAllTracks | A 2D rose-plot |
plotSampleTracks | A 2D rose-plot of sample cells |
PlotTracksSeparately | A graphical display of the track of each cell. |
rmPreProcessing | Data preprocessing for random migration (RM) |
setAnalyticParams | Method setAnalyticParams |
setAnalyticParams-method | Method setAnalyticParams |
setCellMigSlot | Method setCellMigSlot |
setCellMigSlot-method | Method setCellMigSlot |
setCellsMeta | Set MetaData |
setCellTracks | Method setCellTracks |
setCellTracks-method | Method setCellTracks |
setExpName | Method setExpName |
setExpName-method | Method setExpName |
setOptimizedParams | Method setOptimizedParams |
setOptimizedParams-method | Method setOptimizedParams |
setProcessedImages | Method setProcessedImages |
setProcessedImages-method | Method setProcessedImages |
setProcessingStatus | Method setProcessingStatus |
setProcessingStatus-method | Method setProcessingStatus |
setTrackedCellsMeta | Method setTrackedCellsMeta |
setTrackedCellsMeta-method | Method setTrackedCellsMeta |
setTrackedCentroids | Method setTrackedCentroids |
setTrackedCentroids-method | Method setTrackedCentroids |
setTrackedPositions | Method setTrackedPositions |
setTrackedPositions-method | Method setTrackedPositions |
setTrackingStats | Method setTrackingStats |
setTrackingStats-method | Method setTrackingStats |
trackedCells | The trackedCells Class. |
trackedCells-class | The trackedCells Class. |
TrajectoryDataset | Trajectories of 350 cells |
VeAutoCor | Velocity AutoCorrelation |
visualizeCellTracks | Visualize Cell Tracks originating at an Image Stack |
VisualizeStackCentroids | Visualize Cells in an Image Stack |
wsaPreProcessing | Data preprocessing for wound scratch assay (WSA). |