Drivernet: uncovering somatic driver mutations modulating transcriptional networks in cancer

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Documentation for package ‘DriverNet’ version 1.44.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

DriverNet-package	Drivernet: uncovering somatic driver mutations modulating transcriptional networks in cancer
actualEvents	Actual events covered by driver mutations
actualEvents-method	Class '"DriverNetResult"'
computeDrivers	Compute a list of driver mutations
computeRandomizedResult	Randomly compute lists of driver mutations
DriverNet	Drivernet: uncovering somatic driver mutations modulating transcriptional networks in cancer
DriverNetResult-class	Class '"DriverNetResult"'
drivers	List of driver mutations identified by DriverNet
drivers-method	Class '"DriverNetResult"'
getPatientOutlierMatrix	Compute the patient outlier matrix
preprocessMatrices	Remove unnecessary entries from matrices
resultSummary	Summarize result for drivers ranking.
sampleDriversList	Sample DriverNet result
sampleGeneNames	Sample gene names
sampleInfluenceGraph	Sample influence graph
samplePatientExpressionMatrix	Sample patient expression matrix
samplePatientMutationMatrix	Sample patient mutation matrix
samplePatientOutlierMatrix	Sample patient outlier matrix
sampleRandomDriversResult	Sample Result from computeRandomizedResult
totalEvents	Total number of events in the data
totalEvents-method	Class '"DriverNetResult"'