Clustering Deviation Index (CDI)

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Documentation for package ‘CDI’ version 1.2.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

calculate_CDI	Clustering Deviance Index (CDI)
CDI	Clustering Deviation Index.
CDI_lineplot	Visualize CDI values via a lineplot
contingency_heatmap	Heatmap of contingency table
feature_gene_selection	Select feature genes
one_batch_matrix	Simulated count matrix from one batch
one_batch_matrix_celltype	Cell type labels of simulated count matrix from one batch
one_batch_matrix_label_df	Clustering labels for simulated one-batch single-cell count matrix
size_factor	Size factor of each cell
two_batch_matrix	Simulated count matrix from two batches
two_batch_matrix_batch	Batch labels of simulated count matrix from two batches
two_batch_matrix_celltype	Cell type labels of simulated count matrix from two batches
two_batch_matrix_label_df	Clustering labels for simulated two-batch single-cell count matrix