aucellResults | Wrapper to the matrix that stores the AUC or the cell rankings. |
aucellResults-class | Wrapper to the matrix that stores the AUC or the cell rankings. |
AUCell_assignCells | AUCell_assignCells |
AUCell_buildRankings | Build gene expression rankings for each cell |
AUCell_buildRankings-method | Build gene expression rankings for each cell |
AUCell_calcAUC | Calculate AUC |
AUCell_calcAUC-method | Calculate AUC |
AUCell_exploreThresholds | AUCell_exploreThresholds |
AUCell_plotHist | Plot AUC histogram |
AUCell_plotTSNE | Plot |
AUCell_run | Run AUCell |
AUCell_run-method | Run AUCell |
cbind | Wrapper to the matrix that stores the AUC or the cell rankings. |
cbind-method | Wrapper to the matrix that stores the AUC or the cell rankings. |
getAssignments | AUCell_exploreThresholds |
getAUC | Wrapper to the matrix that stores the AUC or the cell rankings. |
getAUC-method | Wrapper to the matrix that stores the AUC or the cell rankings. |
getRanking | Wrapper to the matrix that stores the AUC or the cell rankings. |
getRanking-method | Wrapper to the matrix that stores the AUC or the cell rankings. |
getSetNames | Get gene set name (excluding number of genes/regions after space) |
getThresholdSelected | AUCell_exploreThresholds |
nGenes | GeneSet methods |
nGenes-method | GeneSet methods |
orderAUC | orderAUC |
plotEmb_rgb | plotEmb_rgb |
plotGeneCount | plotGeneCount |
plotTsne_cellProps | plotTsne_cellProps |
rbind | Wrapper to the matrix that stores the AUC or the cell rankings. |
rbind-method | Wrapper to the matrix that stores the AUC or the cell rankings. |
setGeneSetNames | GeneSet methods |
setGeneSetNames-method | GeneSet methods |
show | Wrapper to the matrix that stores the AUC or the cell rankings. |
show-method | Wrapper to the matrix that stores the AUC or the cell rankings. |
subsetGeneSets | GeneSet methods |
subsetGeneSets-method | GeneSet methods |
updateAucellResults | Update AUCell results |