A package to produce metagene plots

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Documentation for package ‘metagene2’ version 1.20.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

as_is_region_order	Returns an "as-is" ordering of regions.
Bam_Handler	A class to manage BAM files.
coverage_order	Determines ordering of regions as a function of coverage.
get_demo_bam_files	Get BAM filenames for demo
get_demo_design	Get a demo design object
get_demo_metagene	Get a demo metagene object
get_demo_regions	Get demo regions
get_demo_region_filenames	Get regions filenames for demo
get_demo_rna_bam_files	Get BAM filenames for demo
get_demo_rna_regions	Get demo regions
metagene2	A class to manage metagene analysis.
metagene2_heatmap	Plots a heatmap of coverages from a metagene2 object.
plot_metagene	Produce a metagene plot