Implementation of MultiDataSet and ResultSet

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Documentation for package ‘MultiDataSet’ version 1.32.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

add_eset	Method to add an 'eSet' to 'MultiDataSet'.
add_eset-method	MultiDataSet instances
add_genexp	Method to add an expression microarray dataset to 'MultiDataSet'.
add_genexp-method	MultiDataSet instances
add_methy	Method to add a slot of methylation to 'MultiDataSet'.
add_methy-method	MultiDataSet instances
add_rnaseq	Method to add an expression RNA seq dataset to 'MultiDataSet'.
add_rnaseq-method	MultiDataSet instances
add_rse	Method to add a 'RangedSummarizedExperiment' to 'MultiDataSet'.
add_rse-method	MultiDataSet instances
add_se	Method to add a 'SummarizedExperiment' to 'MultiDataSet'.
add_se-method	MultiDataSet instances
add_snps	Method to add a slot of SNPs to 'MultiDataSet'.
add_snps-method	MultiDataSet instances
add_table	Method to add a 'matrix' to 'MultiDataSet'.
add_table-method	MultiDataSet instances
as.list	MultiDataSet instances
as.list-method	MultiDataSet instances
assayData	MultiDataSet instances
assayData-method	MultiDataSet instances
chrNumToChar	Convert chr numbers to chr strings
commonIds	Get the name of the ids common to all datasets
commonIds-method	MultiDataSet instances
commonSamples	Method to select samples that are present in all datasets.
commonSamples-method	MultiDataSet instances
createMultiDataSet	MultiDataSet instances
create_resultset	Class ResultSet
dims	MultiDataSet instances
dims-method	MultiDataSet instances
fData	MultiDataSet instances
fData-method	MultiDataSet instances
fData-method	Class ResultSet
featureData	MultiDataSet instances
featureData-method	MultiDataSet instances
getAssociation	Method to extrat feature result from a ResultSet
getAssociation-method	Class ResultSet
lambdaClayton	Lambda Calculation for a vector of P-Values
length	MultiDataSet instances
length-method	MultiDataSet instances
length-method	Class ResultSet
mae2mds	Convert a 'MultiAssayExperiment' to a 'MultiDataSet'
mds2mae	Convert a 'MultiDataSet' to a 'MultiAssayExperiment'
MultiDataSet	MultiDataSet: Implementation of the BRGE's basic classes
MultiDataSet-class	MultiDataSet instances
MultiDataSet-methods	MultiDataSet instances
MultiDataSet-methods,	MultiDataSet instances
names	MultiDataSet instances
names-method	MultiDataSet instances
names-method	Class ResultSet
ncol	MultiDataSet instances
ncol-method	MultiDataSet instances
nrow	MultiDataSet instances
nrow-method	MultiDataSet instances
opt	Method to get the options sued to create the ResultSet
opt-method	Class ResultSet
pData	MultiDataSet instances
pData-method	MultiDataSet instances
phenoData	MultiDataSet instances
phenoData-method	MultiDataSet instances
plot-method	Class ResultSet
qq_plot	Function to draw a QQ Plot from a vector of numbers
ResultSet	Class ResultSet
ResultSet-class	Class ResultSet
ResultSet-methods	Class ResultSet
rowRanges	MultiDataSet instances
rowRanges-method	MultiDataSet instances
rowRangesElements	Get the name of the datasets that have rowRanges
rowRangesElements-method	MultiDataSet instances
rset	Example 'ResultSet'
sampleNames-method	MultiDataSet instances
subset-method	MultiDataSet instances
varLabels-method	Class ResultSet
volcano_plot	Function to draw a Volcano Plot
w_iclusterplus	Apply iClusterPlus clustering method to a MultiDataSet object
w_iclusterplus-method	MultiDataSet instances
w_mcia	Apply mcia integration method to a MultiDataSet object
w_mcia-method	MultiDataSet instances
[	MultiDataSet instances
[-method	MultiDataSet instances
[[-method	MultiDataSet instances